Laboratoire d'Informatique Médicale et d'Ingénierie des Connaissances en e-Santé

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Publications

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Publications de SOUALMIA Lina
Publication de type "Article indexé"
2013
1. Lecroq T, Soualmia L "From genome sequencing to bedside. Findings from the section on bioinformatics and translational informatics." IMIA Yearbook of Medical Informatics 2013 8:175-7
Publications de type "Communication dans un congrès"
2018
2. Chebil W, Soualmia L, Omri M "Possibilistic Information Retrieval Model Based on a Multi-terminology" 2018 11323:66-79 Advanced Data Mining and Applications - 14th International Conference Nanjing China
2017
3. Chebil W, Soualmia L, Omri M, Darmoni S "Indexing biomedical documents with Bayesian networks and terminologies" 2017 2017 12th International Conference on Intelligent Systems and Knowledge Engineering (ISKE) Nanjing China
4. Lelong R, Soualmia L, Dahamna B, Darmoni S "Une technologie NoSQL au service de moteur de recherche en santé" 2017 4ème édition du Symposium sur l'Ingénierie de l'Information Médicale, SIIM 2017 Toulouse France
5. Cabot C, Soualmia L, Darmoni S "CIM-IND : Un système multilingue pour l’extraction d’information dans les textes cliniques" 2017 4ème édition du Symposium sur l'Ingénierie de l'Information Médicale, SIIM 2017 Toulouse France
6. Mary M, Soualmia L, Gansel X "Formalisation de la terminologie LOINC et évaluation de ses avantages pour la classification des tests de laboratoire" 2017 2-13 28es Journées francophones d'Ingénierie des Connaissances IC 2017 Caen France
7. Mary M, Soualmia L, Gansel X, Darmoni S, Karlsson D, Schulz S "Ontological Representation of Laboratory Test Observables: Challenges and Perspectives in the SNOMED CT Observable Entity Model Adoption" 2017 10259:14-23 Artificial Intelligence in Medicine - 16th Conference on Artificial Intelligence in Medicine, Vienna Austria
2016
8. Mary M, Soualmia L, Gansel X "Usability and Improvement of Existing Alignments: the LOINC-SNOMED CT Case Study." 2016 2016 20th International Conference on Knowledge Engineering and Knowledge Management, EKAW Italy Bologna
9. Mary M, Soualmia L, Gansel X "Projection des Propriétés d’une Ontologie pour la Classification d’une Ressource Terminologique." 2016 Actes des 6èmes Journées Francophones sur les Ontologies (JFO) Bordeaux France
10. Mary M, Soualmia L, Gansel X "Projection des Propriétés d’une Ontologie pour la Classification d’une Ressource Terminologique" 2016 Actes des 6èmes Journées Francophones sur les Ontologies (JFO) Bordeaux France
11. Cabot C, Soualmia L, Darmoni S "SIBM at CLEF eHealth Evaluation Lab 2016: Extracting Concepts in French Medical Texts with ECMT and CIMIND" 2016 Conference and Labs of the Evaluation forum, CLEF Évora Portugal
12. Mary M, Soualmia L, Gansel X "Interopérabilité Sémantique dans le Domaine du Diagnostic in vitro." 2016 Actes du 2ème Atelier Intelligence Artificielle & Santé@IC Montpellier France
13. Mary M, Soualmia L, Gansel X "Évaluation de la Qualité des Liens Sémantiques entre Vocabulaires Contrôlés" 2016 Actes de l’Atelier SoWeDo (des Sources Ouvertes au Web de Données)@IC Montpellier France
14. Henry V, Soualmia L, Julien G, Desfeux A, Darmoni S, Gonzalez B "OMIConto : une Ressource Termino-Ontologique pour la Qualification et l’Indexation des Outils d’Analyse en Sciences Omiques" 2016 Actes du 2ème Atelier Intelligence Artificielle & Santé @ IC Montpellier France
15. Romain L, Cabot C, Soualmia L, Dahamna B, Darmoni S "Semantic Search Engine to Query into Electronic Health Records with a Multiple-Layer Query Language" 2016 ACM SIGIR Workshop on Medical Information Retrieval, MEDIR Pisa Italy
2015
16. Soualmia L, Cabot C, Dahamna B, Darmoni S "SIBM at CLEF e-Health Evaluation Lab 2015" 2015 Conference and Labs of the Evaluation Forum, CLEF Toulouse France
17. Henry V, Grosjean J, Soualmia L, Bandrowski A, Gonzalez B, Darmoni S, Desfeux A "OMIC-Onto : une Ressource pour l’Indexation et la Recherche d’Outils Omiques" 2015 Actes des Journées Ouvertes en Bioinformatique, Informatique et Mathématiques (JOBIM) Clermont-Ferrand France
18. Cabot C, Soualmia L, Darmoni S "Intégration de données cliniques et omiques pour la recherche d'information dans le Dossier Patient Informatisé" 2015 Journées Francophones d'Ingénierie des Connaissances - IC 2015 Rennes France
19. Cabot C, Soualmia L, Grosjean J, Lelong R, Darmoni S "Integrating and Retrieving Omic Data in Electronic Health Records" 2015 In proceedings of the 7th International Workshop on Knowledge Representation for Health Care (KRH4C), in conjunction with the 15th International Conference on Artificial Intelligence in MEdicine Pavia Italy
2014
20. Grosjean J, Soualmia L, Bouarech K, Jonquet C, Darmoni S "An Approach to Compare Bio-Ontologies Portals" 2014 MIE'2014: 26th International Conference of the European Federation for Medical Informatics Istanbul Turkey
21. Lamy JB, Soualmia L, Venot A, Duclos C "Validation de la sémantique d'un langage iconique médical à l'aide d'une ontologie : méthodes et applications" 2014 51-62 IC - 25èmes Journées francophones d'Ingénierie des Connaissances Clermont-Ferrand France
22. Grosjean J, Soualmia L, Bouarech K, Jonquet C, Darmoni S "Comparing BioPortal and HeTOP: towards a unique biomedical ontology portal?" 2014 IWBBIO'14: 2nd International Work-Conference on Bioinformatics and Biomedical Engineering Granada Spain
2009
23. Krivine S, Nobécourt J, Soualmia L, Cerbah F, Duclos C "Construction automatique d'ontologie à partir de bases de données relationnelles : application au médicament dans le domaine de la pharmacovigilance" 2009 pp IC 2009 Tunisia
2008
24. Soualmia L, Dahamna B, Darmoni S "Mining knowledge from Corpora: an Application to Retrieval and Indexing" 2008 136:467-472 eHealth Beyond the Horizon - Get IT There, Proceedings of MIE2008, The XXIst International Congress of the European Federation for Medical Informatics, Göteborg, Sweden Göteborg Sweden
2007
25. Soualmia L, Dahamna B "Knowledge Acquisition from a Medical Corpus: Use and Return on Experiences" 2007 4594:160-164 11th Conference on Artificial Intelligence in Medicine Artificial Amsterdam Netherlands
2006
26. Neveol A, Pereira S, Soualmia L, Thirion B, Darmoni S "A method of cross-lingual consumer health information retrieval" 2006 124:601-608 Medical Informatics Europe Masstricht Netherlands
27. Soualmia L, Dahamna B, Thirion B, Darmoni S "Strategies for health information retrieval" 2006 124:595-600 Medical Informatics Europe Masstricht Netherlands
Publication de type "Poster"
2018
28. Lelong R, Soualmia L, Sakji S, Dahamna B, Darmoni S "NoSQL technology in order to support Semantic Health Search Engine" 2018 Medical Informatics Europe, MIE 2018 Goteborg Sweden
Publications de type "Thèse et mémoire"
2015
29. Soualmia L "Gestion des Connaissances pour l'Accès aux Informations en Santé" 2015 223 Rouen France
2004
30. Soualmia L "Etude et Evaluation d'Approches Multiples d'Expansion de Requêtes pour une Recherche d'Information Intelligente" 2004
Publications de type "Chapitre d'ouvrage"
2017
31. Mary M, Soualmia L, Gansel X "Usability and Improvement of Existing Alignments: The LOINC-SNOMED CT Case Study" 2017 10180:145-148
2015
32. Soualmia L, Lelong R, Dahamna B, Darmoni S "Rewriting Natural Language Queries Using Patterns" 2015 9059:40-53
2014
33. Venot A, Charlet J, Darmoni SJ, Duclos C, Dufour JC, Soualmia L "Management and Dissemination of Health Knowledge" Medical Informatics, e-Health – Fundamentals and Applications, eds Venot A, Burgun A, Quantin C, Spinger-Verlag, Paris 2014 Paris France
34. Duclos C, Burgun A, Lamy JB, Landais P, Rodrigues JM, Soualmia L, Zweigenbaum P "Medical Vocabulary, Terminological Resources and Information Coding in the Health Domain" Medical Informatics, e-Health - Fundamentals and Applications 2014 11-42
2012
35. Duclos C, Burgun A, Lamy JB, Landais P, Rodrigues JM, Soualmia L, Zweigenbaum P "Le vocabulaire médical, les ressources terminologiques, le codage de l'information en santé" Informatique Médicale, e-Santé - Fondements et applications 2012
Publications de type "Article indexé dans PubMed ou WOS en informatique ou informatique médicale"
2018
36. Holmes J, Soualmia L, Séroussi B "A 21st Century Embarrassment of Riches: The Balance Between Health Data Access, Usage, and Sharing" IMIA Yearbook of Medical Informatics 2018 27:005-006
37. Cabot C, Soualmia L, Lelong R, Grosjean J, Darmoni S "Retrieving Clinical and Omic Data from Electronic Health Records." Studies in Health Technology and Informatics 2018 115
38. Cabot C, Soualmia L, Grosjean J, Griffon N, Darmoni S "Evaluation of the Terminology Coverage in the French Corpus LiSSa." Studies in Health Technology and Informatics 2018 126-130
39. Lelong R, Soualmia L, Dahamna B, Griffon N, Darmoni S "Querying EHRs with a Semantic and Entity-Oriented Query Language." Studies in Health Technology and Informatics 2018 235:121-125
2017
40. Lamy JB, Soualmia L "Formalization of the semantics of iconic languages: An ontology-based method and four semantic-powered applications" Knowledge-Based Systems 2017 135:159 - 179
41. Séroussi B, Soualmia L, Holmes J "Transforming Data into Knowledge: How to Improve the Efficiency of Clinical Care?" IMIA Yearbook of Medical Informatics 2017 26:4 - 6
42. Haux R, Geissbuhler A, Holmes J, Jaulent M, Koch S, Kulikowski A, Lehmann C, Mccray A, Séroussi B, Soualmia L et al. "On Contributing to the Progress of Medical Informatics as Publisher" IMIA Yearbook of Medical Informatics 2017 26:9 - 15
43. Lelong R, Soualmia L, Dahamna B, Griffon N, Darmoni SJ "Querying EHRs with a Semantic and Entity-Oriented Query Language." Studies in health technology and informatics 2017 235:121-125
2016
44. Mélissa M, Soualmia L, Xavier G "Interopérabilité sémantique entre vocabulaires contrôlés. évaluation de la qualité des alignements sur des données de standards du diagnostic in vitro" Ingéniérie des Systèmes d'Information 2016 21:55-83
45. CHEBIL Wiem, Soualmia L, NAZIH Mohamed Omri, Darmoni S "Indexing biomedical documents with a possibilistic network" JASIST 2016 67(4):928-941
46. Lamy JB, Soualmia L, Duclos C, Venot A "Formalisation de la sémantique des langages iconiques" Revue des Sciences et Technologies de l'Information - Série RIA : Revue d'Intelligence Artificielle 2016 30:579-606
47. Soualmia L, Charlet J "Efficient Results in Semantic Interoperability for Health Care" IMIA Yearbook of Medical Informatics 2016 184 - 187
2015
48. Soualmia L, Lecroq T "Bioinformatics Methods and Tools to Advance Clinical Care" IMIA Yearbook of Medical Informatics 2015 10:170 - 173
2014
49. Griffon N, Kerdelhué G, Soualmia L, Merabti T, Grosjean J, Lamy JB, Venot A, Duclos C, Darmoni S "Evaluating alignment quality between iconic language and reference terminologies using similarity metrics." BMC Medical Informatics and Decision Making 2014 14:17
50. Griffon N, Schuers M, Soualmia L, Grosjean J, Kerdelhué G, Kergourlay I, Dahamna B, Darmoni S "A Search Engine to Access PubMed Monolingual Subsets: Proof of Concept and Evaluation in French" Journal of Medical Internet Research 2014 16:e271
51. Lecroq T, Soualmia L "Managing Large-Scale Genomic Datasets and Translation into Clinical Practice" IMIA Yearbook of Medical Informatics 2014 9:212 - 214
2013
52. Lamy JB, Soualmia L, Kerdelhué G, Venot A, Duclos C "Validating the semantics of a medical iconic language using ontological reasoning." Journal of Biomedical Informatics 2013 46:56-67
53. Lamy JB, Soualmia L, Kerdelhué G, Venot A, Duclos C "Validating the semantics of a medical iconic language using ontological reasoning." Journal of Biomedical Informatics 2013 46:56-67
54. Grosjean J, Merabti T, Soualmia L, Letord C, Charlet J, Robinson P, Darmoni S "Integrating the Human Phenotype Ontology into HeTOP Terminology-Ontology Server." Studies in Health Technology and Informatics 2013 192:961
55. Merabti T, Soualmia L, Grosjean J, Letord C, Darmoni S "Assisting the Translation of SNOMED CT into French." Studies in Health Technology and Informatics 2013 192:47-51
56. Darmoni S, Soualmia L, Griffon N, Grosjean J, Kerdelhué G, Kergourlay I, Dahamna B "Multi-lingual Search Engine to Access PubMed Monolingual Subsets: A Feasibility Study." Studies in Health Technology and Informatics 2013 192:966
57. Merabti T, Soualmia L, Grosjean J, Letord C, Darmoni S "Assisting the Translation of SNOMED CT into French." Studies in Health Technology and Informatics 2013 192:47-51
58. Soualmia L, Letord C, Merabti T, Griffon N, Manel J, Darmoni S "Translating MeSH Concepts." Studies in Health Technology and Informatics 2013 192:1007
2012
59. Darmoni S, Soualmia L, Letord C, Jaulent MC, Griffon N, Thirion B, Névéol A "Improving information retrieval using Medical Subject Headings Concepts: a test case on rare and chronic diseases." Journal of the Medical Library Association 2012 100:176-83
60. Soualmia L, Prieur-Gaston E, Moalla Z, Lecroq T, Darmoni S "Matching health information seekers' queries to medical terms." BMC Bioinformatics 2012 13 Suppl 14:S11
2011
61. Merabti T, Soualmia L, Grosjean J, Palombi O, Muller JM, Darmoni S "Translating the Foundational Model of Anatomy into French using knowledge-based and lexical methods" BMC Medical Informatics and Decision Making 2011 11:65
62. Grosjean J, Merabti T, Dahamna B, Kergourlay I, Thirion B, Soualmia L, Darmoni S "Health multi-terminology portal: a semantic added-value for patient safety." Studies in Health Technology and Informatics 2011 166:129-38
63. Griffon N, Soualmia L, Névéol A, Massari P, Thirion B, Dahamna B, Darmoni S "Evaluation of multi-terminology super-concepts for information retrieval." Studies in Health Technology and Informatics 2011 169:492-6
2010
64. Duclos C, Soualmia L, Krivine S, Jamet A, Lillo-Louët A "Modeling, building and evaluating an ontology for the automatic characterization of adverse drug effects during pharmacovigilance." Studies in Health Technology and Informatics 2010 160:1005-9
2008
65. Soualmia L, Dahamna B, Darmoni S "Mining knowledge from corpora: an application to retrieval and indexing." Studies in Health Technology and Informatics 2008 136:467-72
2007
66. Cuggia M, Darmoni SJ, Garcelon N, Soualmia L, Bourde A "Doc'UMVF: two search tools to provide quality-controlled teaching resources in French to students and teachers." International journal of medical informatics 2007 76:357-62
67. Cuggia M, Darmoni S, Garcelon N, Soualmia L, Bourdé A "Doc'UMVF: two search tools to provide quality-controlled teaching resources in French to students and teachers." International Journal of Medical Informatics 2007 76:357-62
68. Cuggia M, Darmoni S, Garcelon N, Soualmia L, Bourdé A "Doc'UMVF: Two search tools to provide quality-controlled teaching resources in French to students and teachers" International Journal of Medical Informatics 2007 6:357-362
2006
69. Darmoni S, Neveol A, Renard JM, Gehanno JF, Soualmia L, Dahamna B, Thirion B "A MEDLINE categorization algorithm" BMC Medical Informatics and Decision Making 2006 6:7
70. Soualmia L, Dahamna B, Thirion B, Darmoni S "Strategies for health information retrieval." Studies in Health Technology and Informatics 2006 124:595-600
71. Névéol A, Pereira S, Soualmia L, Thirion B, Darmoni S "A method of cross-lingual consumer health information retrieval." Studies in Health Technology and Informatics 2006 124:601-8
72. Darmoni S, Névéol A, Renard JM, Gehanno JF, Soualmia L, Dahamna B, Thirion B "A MEDLINE categorization algorithm." BMC Medical Informatics and Decision Making 2006 6:7
2005
73. Soualmia L, Darmoni S "Combining different standards and different approaches for health information retrieval in a quality-controlled gateway." International Journal of Medical Informatics 2005 74:141-50
2004
74. Douyère M, Soualmia L, Névéol A, Rogozan A, Dahamna B, Leroy JP, Thirion B, Darmoni S "Enhancing the MeSH thesaurus to retrieve French online health resources in a quality-controlled gateway." Health Information and Libraries Journal 2004 21:253-61
75. Névéol A, Soualmia L, Douyère M, Rogozan A, Thirion B, Darmoni S "Using CISMeF MeSH "Encapsulated" terminology and a categorization algorithm for health resources." International Journal of Medical Informatics 2004 73:57-64
2003
76. Grabar N, Zweigenbaum P, Soualmia L, Darmoni S "Matching controlled vocabulary words." Studies in health technology and informatics 2003 95:445-50
77. Soualmia L, Darmoni S, Douyère M, Thirion B "Modelisation of consumer health information in a quality-controlled gateway." Studies in Health Technology and Informatics 2003 95:701-6
78. Grabar N, Zweigenbaum P, Soualmia L, Darmoni S "Matching controlled vocabulary words." Studies in Health Technology and Informatics 2003 95:445-50
2002
79. Soualmia L, Darmoni S, Le D, Douyere M, Thelwall M "Web impact factor: a bibliometric criterion applied to medical informatics societies' web sites." Studies in Health Technology and Informatics 2002 90:178-83
Publication de type "Article indexé dans PubMed ou WOS en Santé Publique et autres disciplines scientifiques"
2019
80. Cabot C, Darmoni S, Soualmia L "Cimind: A phonetic-based tool for multilingual named entity recognition in biomedical texts" Journal of Biomedical Informatics 2019 103176
Publication de type "Autre publication"
2018
81. Abdeddaim S, Vimard S, Soualmia L "The MeSH-gram Neural Network Model: Extending Word Embedding Vectors with MeSH Concepts for UMLS Semantic Similarity and Relatedness in the Biomedical Domain" 2018
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